Sunday, March 29, 2009

tidbits

3d cfd model has 5-10m cells.
each cell can solve 7 equations per iteration
cfd solvers are iterative solvers, needs 3-4k iterations
one CPU can handle up to 0.5m cells

parallel computing - which is better: multicore, smp (large shared memory for structual/thermal apps), cluster (massively parallel mpp; high speed connected hosts for cfd apps) or grid (slow speed connected hosts)


fluent 4gb/core
16 cores: 2 serial + 14 parallel
4 cores: 1 serial + 3 parallel

cfx 4gb/core
8 cores: 1 serial + 7 parallel

ls-dyna 4gb/core
4 cores:

abacus 4gb/core
4 cores

ansys 4gb/core
8 cores

mscnastran/nxnastran 4gb/core
4 cores

suggested config

cpu: 4 nodes x 2 cpu per node x 4 cores per cpu
ram: 4 gb per core = 16 gb per cpu = 32 gb per node

costing:
nodes: USD 33500 for 4 nodes, (is it inclusive of rack, cabling etc)
infiniband: USB 14500 for 4 nodes
quadrics: na
storage: lustre, san,
mgmt: scheduler, ssi, failover job restart, ganglia, nagios, big brother
scheduler: lsf USD 15000
support: next business day included, 24*7 4-hour USD 400

considerations: application's system requirements, sys admin hassle (least possible units, user mgmt : active directory, ldap), end user ease of use, cost effective/long shelf life/sustained ROI, training/support from vendors,

cost to consider: ramp up time, licensing cost for different hw architectures

scalability: most os allow 32 to 64 partitions in one partition, for openmp limit is 8 to 16 processes.
benchmarking: pallas

what about license server? flexlm
do we have some benchmark results?

virtual lsf master with failover to smp host
common lsf config dir [on nas]
wall clock queues (short, medium, unlimited)
app starts [wrappers to lsf]
multiple versions of apps
ad integration
licensing using lsf resources [existing flexlm license server]
elim dynamic resource update based on actual license server usage
move job data to local stratch at dispatch
user machines are standard win32/64


todo
hardware recommendations
parallel file system design
test server/dev env hardware bom
implementation support plan
handoff
move to preppost licenses [to stnadardize/separate out solver licenses][provides a means to keep working while solve is running]
add mechhps licenses [permits more than 2 procs per job]
add hpc solvers support to all ansys users [3-4 nodes]

is os on different nodes (exec, master, license etc) decided?
does bom include rack cost?
does bom include nw equipment inside rack cost?
http://www.bioteam.net/resources/presentations/SGE-Workshop-2007/SGE_and_LSF.pdf

Platform LSF Version 6.1 - Using the Platform LSF SDK - Welcome

Platform LSF Version 6.1 - Using the Platform LSF SDK - Welcome

choosing: SGE vs LSF vs Torque

choosing: SGE vs LSF vs Torque

Re: [SAGE] [lopsa-discuss] LSF vs GRID engine

Re: [SAGE] [lopsa-discuss] LSF vs GRID engine

Sunday, March 22, 2009

problems

sleep on stomach
saliva discharge in sleep
eczema, skin rashes easily (check for blood platlet count, read http://en.wikipedia.org/wiki/Hodgkin's_lymphoma)

beer

21st March 2009 7:00 PM: had 500ml carlsberg, no problem that i remember ,
21st march 2009 10:00 PM: had rice, mushrooms, and dal 1 hour before drinking, had two 330ml tiger, got slightly stuffy nose within 1 hour of drinking, but it was fine by 2:00 AM
23rd march 2009 12:30 AM: had maggi 1 hour before drinking, had carslbery 330 ml on 22nd March 2009 1:30 AM , completely stuffed nose within 3 hours of drinking, severe water discharge from left eye and left nostril, enlarged sinus, , had difficult sleep, itchy eyes whole day, no elevated problem of skin rashes

jaw pain:

tiger (not always)
http://www.steadyhealth.com/Pain_cramp_in_jaw_bone___especially_when_I_drink_alcohol_spirits_t102397_st20.html (in rare cases), according to post above, jaw pain after consuming alcohal is linked to hodgin's disease
http://en.wikipedia.org/wiki/Hodgkin

stuufed nose: carlsberg

no problem: corona,